IRSF APPROACH

Our Scientific Strategy

IRSF’s highly comprehensive scientific program in Rett syndrome—bolstered by unprecedented industry partnerships—includes the advancement of genetic approaches and developing drugs that improve quality of life, as well as the development of a clinical research network that brings treatments to families.

Over the last decade alone, we have funded nearly 150 research projects to accelerate fundamental research, drug development, and clinical trials in Rett syndrome. Our track record of delivering real results includes funding the discovery that Rett can be reversed, the first gene therapy clinical trial, and the first FDA-⁠⁠approved treatment.

Active IRSF-Funded Projects

The following research projects are actively receiving funding from IRSF to advance our fundamental knowledge of Rett syndrome or to treat and cure it. We offer a variety of funding mechanisms to support researchers whose goals align.

Integrated multi-level characterization of Rett syndrome disease states

Different labs study the errors that occur in Rett neurons one at a time – this makes it hard to combine the results and paint the big picture. This project studies three key changes in Rett neurons in the same neuron – permitting a holistic characterization of the disease process and providing clues about how the process can be reversed. Co-PIs: Andre Sousa, PhD, Daifeng Wang, PhD, and Xinyu Zhao, PhD – University of Wisconsin-Madison
innovation Award, 2022

Pilot study to establish abnormal motor network dynamics during reaching and grasping movements in a mouse model of Rett Syndrome

The loss of purposeful hand movements is a central feature of Rett Syndrome. This project combines large-scale neural recordings with high-resolution tracking of hand movements in animal models to advance understanding of the brain mechanisms that cause these same movements in Rett Syndrome. This may also provide valuable information about related speech or cognitive symptoms.
Innovation Award, 2022

The dysfunction of swallow and its coordination with breathing in Mecp2-null mice

Swallowing difficulties are common in Rett syndrome, often leading to choking and aspiration pneumonia, but little is known about the underlying causes. This first-of-its-kind study will use a specialized mouse model to investigate how MeCP2 mutations disrupt swallowing and its coordination with breathing. The findings will provide key insights to guide future treatments for dysphagia in Rett syndrome.
Innovation Award, 2024

Single-Molecule Investigation of Nucleosomes as Recruiting Hotspots for MeCP2

DNA-binding is one of the fundamental roles of MeCP2 – but not all the pieces are understood. This project employs an innovative ultra-high-resolution microscopy approach, tracking one molecule of MeCP2 at a time on DNA, that could help uncover new avenues for therapeutic intervention for Rett syndrome.
innovation Award, 2022

The role of transcriptional condensates in Rett Syndrome

Some parts of the MeCP2 protein are flexible, and these portions help it gather together with its partners – like DNA, RNA, and other proteins – to form island-like areas within the cell’s nucleus. This project studies how RTT mutations interfere with this, and screens for drugs that can decrease or fix this defect. Mentor: Huda Zoghbi, MD | Baylor College of Medicine
Independence Award, 2022
Jessica MacDonald, PhD

Dissecting Neurodevelopmental Disruptions in Rett Syndrome to Identify Novel Therapeutic Targets

During early development, the brain refines its neural connections, allowing for learning and adaptability. In Rett syndrome, this process is disrupted, partly due to the premature formation of perineuronal nets (PNNs)—structures that regulate brain plasticity. This study will investigate how PNNs form too early in Rett, whether astrocytes contribute to this disruption, and whether targeting these changes could help maintain flexibility in brain circuits. Understanding these mechanisms could point to new therapeutic strategies to support cognitive and developmental progress in Rett syndrome.
Innovation Award, 2024

Advancing an understanding of MECP2 function by identification of methylated RNA targets

MeCP2 is mainly known for its association with DNA, but researchers have started to find that it works with another key molecule – RNA. This project digs deeper into how MeCP2 works with RNA and may uncover new potential therapies for Rett syndrome.
innovation Award, 2022

Exploring the formation and function of novel MECP2 genomic binding sites

This is a potentially paradigm-shifting study on where and how MeCP2 binds to DNA. This new exploration into the roles of previously uncharacterized mechanisms will provide more options for therapeutic strategies to treat individuals with Rett syndrome.
innovation Award, 2022

Dissecting the role of MeCP2 loss-of-function on redox and immune homeostasis. Could the endoplasmic reticulum-mitochondria axis be involved in Rett syndrome?

Mitochondria are the powerhouses for cells and provide energy to carry out most cellular processes. Their function, however, is altered in RTT. This project digs deeper into one aspect of this dysfunction by studying Mitochondria-associated ER membranes (MAMs). In the process, it may help to better understand some characteristic RTT symptoms. Previous PI: Alessandra Pecorelli, PhD, PharmD
innovation Award, 2021
Zhaolan Zhou, PhD

Synaptic insights at the protein level in heterozygous female models of Rett syndrome

X-linked mosaicism—where some brain cells express healthy MECP2 while others do not—adds complexity to understanding how Rett syndrome presents in females. To address this cellular mosaicism, this study will use an advanced model to investigate how MeCP2 mutations alter synaptic protein composition and neuronal connectivity at the level of individual brain cells and synapses. By identifying molecular disruptions underlying the disease process, researchers aim to identify molecular targets for potential therapeutic intervention.
Innovation Award, 2024
Xiaowei Zhuang, PhD

Regulation of 3D genome organization and gene transcription by MeCP2 during brain development

MeCP2 helps organize DNA in brain cells, but how exactly that influences which genes are turned on or off is not understood. This study will use advanced imaging to examine how MeCP2 affects 3D DNA structure and gene expression over time in a Rett syndrome mouse model. Findings will address a long-standing question about MeCP2’s role in gene regulation and may help inform future treatments.
Innovation Award, 2024
Sameer Bajikar, PhD

Modulation of the GDF11-SMAD3 signaling pathway to treat Rett syndrome

Dr. Bajikar has found that MeCP2 could be regulating 2 key genes – GDF11 and Smad3. The imbalance MeCP2 causes within these genes may contribute to the development of Rett syndrome. With this project, he will dig deeper into restoring the proper function of these genes in mouse models and tests drugs that can restore this balance.Mentor: Huda Zoghbi, MD | Baylor College of Medicine
independence award, 2022
Vania Broccoli, PhD

Modulating MeCP2 expression heterogeneity in brain cells for increasing gene therapy efficacy and safety in Rett syndrome

Current gene therapy vectors are not able to differentiate MECP2 expression between different cells. This project is designed to advance the efficacy and safety of gene therapy for moving rapidly to its exploitation in the clinical arena. A new AAV capsid and gene therapy vector with novel elements able to reduce MECP2 gene levels exclusively in glial cells will be validated.
innovation Award, 2022
Ronald Emeson. PhD

RNA Editing-Mediated Modification of a Common Nonsense Mutation in Rett Syndrome

Dr. Emeson’s lab has developed a novel RNA-editing strategy to engineer short RNAs that may help efficiently repair specific mutations in the RNA transcripts encoding MECP2. Now, they will begin further study of this repair mechanism, beginning with a test tube-based system, and later followed by the use of human cell lines which have been modified to carry the MECP2 mutations.
Innovation Award, 2022
Crystal Engineer, PhD

Novel Neuromodulation Therapy to Address Sensory Hypersensitivity in Rett Syndrome

Many individuals with Rett syndrome experience extreme sensitivity to sounds and touch, as well as heightened anxiety, which can impact communication and social interactions. This study will test whether vagus nerve stimulation (VNS) paired with rehabilitation therapy can reduce sensory hypersensitivity and anxiety in a Rett syndrome rat model. VNS is already FDA-approved for epilepsy and depression and has been successfully used in PTSD treatment. If effective, this approach could offer a new therapy to improve sensory processing, social engagement, and quality of life for individuals with Rett syndrome.
Innovation Award, 2024
Michela Fagiolini, PhD

Targeting choroid plexus Otx2 as novel therapy in RTT

The choroid plexus is easily accessible from the circulatory system and has been exploited as an easy target for gene therapy of pediatric neurological diseases. This project explores if the choroid plexus can be a therapeutic target to treat RTT, paving the way to clinical trials.Co-PI: Takao Hensch, PhD – Harvard Medical School
innovation Award, 2021
Rocco Gogliotti, PhD

The interplay of the heat shock cascade and Rett syndrome

Heat Shock (HS) proteins are a critical mechanism by which all cells respond to stress, and increased HS-signaling is seen in RTT. This project will determine whether increases in HS signaling is driving symptom presentation or serving as a compensatory response to slow disease progression. Targeting HS-signaling would be predicted to impact many of the diverse cell types known to be affected by MeCP2 deficiency.Co-PI: Colleen Niswender, PhD – Vanderbilt University
innovation Award, 2021
Sonia Guil. PhD

Leveraging the RNA binding activity of MECP2 to improve gene replacement therapy for Rett syndrome

Dr. Guil’s lab will design a new gene therapy strategy that improves several features of the current approaches. They will explore moderating MeCP2 levels to avoid toxicity due to excessive expression of the gene (which can be as bad as its deficiency) and discriminating between cells that express the normal gene and cells that express the mutant gene.
innovation Award, 2022
Julian Halmai, PhD

A CRISPR toolbox for curative strategies for Rett syndrome

This project employs a CRISPR-based strategy for restoring MeCP2 through X-chromosome reactivation. An improved CRISPR cassette will be designed that is dramatically reduced in size, thereby allowing it to fit well inside AAV shell for delivery into cells.Kyle Fink, PhD | University of California, Davis
independence Award, 2022
Nicoletta Landsberger, PhD

Anticodon-engineered tRNAs for the treatment of MECP2 nonsense mutations

Around 30% of Rett syndrome cases are caused by nonsense mutations, which create premature stop signals that prevent the MECP2 gene from producing a full-length, functional protein. This study will test a novel approach using engineered transfer RNAs (ACE-tRNAs) to override these faulty stop signals and restore MeCP2 production. Unlike traditional gene therapy, this method works at the RNA level, potentially offering a safer and more controlled way to restore MeCP2 function. Researchers will evaluate its effectiveness in patient-derived cells and a specialized mouse model, assessing its potential as a targeted therapy for individuals with nonsense mutations in MECP2.
Innovation Award, 2024
Jeannie Lee, MD, PhD

Preclinical development of Rett syndrome ASO drugs

This study focuses on restoring MECP2 in patients by reactivating its dormant, normal copy carried on the inactive X chromosome via an ASO-based strategy. This will be achieved by performing proof-of-concept studies in a mouse model and optimizing preclinical candidates in patient cells.
innovation Award, 2022
Jeffrey Neul, MD, PhD

Development of treatment responsive biomarker in RTT

Biomarkers are things that can be measured in a person and might relate to how affected a person is. Unfortunately, there are currently no good biomarkers of improvement in RTT which could help with the development of new treatments and clinical trials. This group has found changes in brain waves in patients and in mouse models that they think could be such biomarkers. In this project, they will test if chemicals that have shown functional improvement in mice also improve brain waves. If successful, these brain wave measurements could be used to shorten the length of clinical trial process, getting drugs and other treatments to patients faster.
Co-PI: Hong-Wei Dong, MD, PhD – Vanderbilt University
innovation Award, 2021
Tim Benke, MD, PhD

The diagnostic experience of male Rett Syndrome

Males with mutations in MECP2 have been understudied with more than 10x as many publications dedicated to females. Data from the NIH- sponsored Natural History Study suggests there is a very broad spectrum of disease symptoms and severity, some of which are different from females. This study will result in a better understanding of the diagnostic odyssey and lived experiences of parents/guardians of males with RTT in order to inform needed future clinical trials.Co-PIs: Dr. Talia Thompson – University of Colorado Denver | Drs. Cary Fu and Jeffrey Neul – Vanderbilt University | Drs. Amitha Ananth and Alan Percy – University of Alabama
Center of Excellence Research Award, 2022

Validation of GHQ

Individuals with RTT syndrome develop gastrointestinal (GI) problems that affect their health. The clinical assessment of GI issues is one area where health and quality of life are overlooked and represent an unmet need. Dr. Motil developed the Gastrointestinal Health Questionnaire (GHQ) to be completed by caregivers to assess GI problems in RTT. This study will validate the GHQ across 6 COE locations and determine if the questionnaire can accurately measure changes in response to GI treatments.
center of excellence research award, 2021
Sarika Peters, PhD

Developing a machine learning model for sleep classification and autonomic dysfunction in Rett Syndrome

Sleep disturbances are a major concern in Rett syndrome, but current methods for tracking sleep rely on caregiver reports or expensive, in-lab sleep studies. This study will use wearable sensors to monitor sleep quality, breathing disruptions (such as apnea), and biological markers linked to stress and anxiety. Researchers will develop a machine learning model to analyze these data and identify patterns related to Rett severity and behavioral outcomes. These findings could lead to improved sleep assessments, better clinical interventions, and expanded use of remote technology to support individuals with Rett syndrome.
Center of Excellence Research Award, 2024
Bernhard Suter, MD

Gait analysis in Rett

Gait is abnormal in RTT and linked to the overall severity of the syndrome. As mobility is an objective way to measure improvement, in the setting of treatments on the horizon that seek to broadly improve RTT, this study aims to build on prior data to develop quantitative outcome markers of gait that can be used and compared across multiple sites. The goal is to have an objective measure that could be used in future clinical trials for RTT.
center of excellence research award, 2021

Inside the Lab

Inside the Lab

Ever wonder what goes on inside the researcher’s laboratory? Meet the scientists on the front lines of Rett research as they share their insights and experiences.